PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00311.1.g00490.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 203aa    MW: 21036.3 Da    PI: 6.8113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00311.1.g00490.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-161967255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                   y+G+r  +++g+Wv+eIr+p     r  +r++lg+f tae+Aa a++ a+ +l+g
  Zpz_sc00311.1.g00490.1.sm.mk 19 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAASALRG 67
                                  69***6..678*********8.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1921975IPR001471AP2/ERF domain
SMARTSM003802.6E-281981IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181976IPR016177DNA-binding domain
PfamPF008472.3E-82067IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-272076IPR001471AP2/ERF domain
CDDcd000184.05E-262077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSAHGGGPSS PRSTGKHPFY RGIRSRSGKW VSEIREPRKV RRIWLGTFPT AEMAAVAYDV  60
AASALRGPDA ALNFPDLAAA RPAPASTSAD DIRAAAAEAA ASLEQPPRRV PAAGRGIAPA  120
AAATGPQQHG GSSAAAAAAQ PEGGSSAPNP YFLDEEALFE TPQFLRNMAA GMMMSPPRIS  180
PNSSDDSPDP SEAGESLWSY RDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-131375163ATERF1
3gcc_A2e-131375163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-96EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446959.12e-95hypothetical protein SORBIDRAFT_06g025890
SwissprotQ9FJ904e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A9B4N51e-101A0A0A9B4N5_ARUDO; Uncharacterized protein
STRINGSb06g025890.16e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-19ERF family protein